I remember using ChemDraw and the 3-D version almost 10 years ago to model nanotubes and nanopeapods (right after peapods were discovered, in fact). This free program does what they did and much more. It's a lot of fun to build little molecules and see how they form, especially when you turn on the auto-optimization that calculates how the molecule would actually position the component atoms. It really does let anyone play around with building and interacting with molecular structures. There are some weird interface issues. First, the keyboard commands to switch between tools are function keys, and don't seem to work on Macs, even if you toggle the function-key setting in System Prefs. Second, closing the last window quits the program. The fragment library doesn't appear to work right now, so it isn't possible to import the sample molecules that come with avogadro. Nevertheless, if you're interested in molecular engineering, nanotech, or anything in that category, this is a free way to have access to a tool that lets you play around. It looks like it has much more advanced features as well, but I can't speak on those with any authority.
Avogadro Molecular Editor
Avogadro 2: graphical application. This happens when using avogadrolibs and not avogadrolibs-git.I've fixed all the git PKGBUILDs, and made avogadrolibs-git a hard dependency. Frankly one should not be using the official avogadrolibs since it isn't properly built for Avogadro 2, and it is based on an release from December 2016. Anyone building on top of Open Chemistry should use bleeding edge. You can download the latest binaries here, or access the current development version using Git.
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